#Snapgene viewer cicrlce map full

Bioinformatics 21:537-539.ĬGView was written by Paul Stothard. Stothard P, Wishart DS (2005) Circular genome visualization and exploration using CGView.The CGView Server can be used to generate maps online. The CGView API can be used to incorporate CGView into Java applications. Tab-delimited input files can be used as an alternative to the XML format.The XML input allows complete control over the appearance of the map.

The interactive maps make use of standard PNG and SVG images and HTML image maps. Static or interactive maps can be generated. Images can be generated in PNG, JPG, or SVG format. Sequence analysis visualization - CGView can be used to display the output of sequence analysis programs in a circular context. Genome poster generation - CGView can generate poster-sized images of circular genomes in rasterized image formats or in Scalable Vector Graphics format. The PNG and image map content does not require Java applets or special browser plugins. In addition to the CGView application, an API is available for generating maps from within other Java applications, using the cgview package.ĬGView can be used for any of the following:īacterial genome visualization and browsing - CGView can be incorporated into bacterial genome annotation pipelines, as a means of generating web content for data visualization and navigation. For examples of the various output types, see the CGView gallery. The feature labels in maps can be hyperlinked to external resources, allowing CGView maps to be integrated with existing web site content or databases. The linked maps can be explored using any web browser, allowing rapid genome browsing, and facilitating data sharing. Configured the 'Export Map' and 'Export History' options to be always enabled. Changed the icon for enabling interrupted circle format for a linear DNA sequence in Map view.

#Snapgene viewer cicrlce map full

In addition to the default full view map, the program can generate a series of hyperlinked maps showing expanded views. Configured SnapGene to show the Launch dialog on macOS when the SnapGene icon in the Dock is clicked, if no SnapGene windows are open. CGView converts the input into a graphical map (PNG, JPG, or SVG format), complete with labels, a title, legends, and footnotes. Feature information and rendering options are supplied to the program using an XML file or a tab-delimited file. Its primary purpose is to serve as a component of sequence annotation pipelines, and as a means of generating visual output suitable for the web. What is CGView? | Gallery | Creating a Map | CGView Application | CGView API | CGView ServerĬGView is a Java package for generating high quality, zoomable maps of circular genomes. CGView - Overview CGView - Circular Genome Viewer